Hello
Welcome to the Centrify Community! It seems you may want to consider using the WS-Fed template app, rather than the SAML template. The WS-Fed does have examples in the template app for passing a Microsoft claim.
To access this, in Cloud Manager go to "Apps>>Add Web Apps>>Custom" and choose "WS-Fed"
More information about configuring the Advanced section of the app, as well as all other catalog apps and instructions, can be found on the online help;
We do have apps which use SCIM, although if you need assistance in creating an app and you are in your evaluation period, I recommend contacting your account manager to ask about Custom application assistance. If you are no longer in evaluation, you can contact Support for further assistance if you do not find the app listed in the catalog.
I hope this helps get you started!
Ryan V