Hi,
I am having the same problem as the person who posted this question. I am using an SCR3310V2 reader and have a G&D FIPS 201 SCE 3.2 CAC. I downloaded all the certificates and installed Centrify. It all seemed to go smoothly. Now when I open Keychain, the only keychains are login, iCloud, System, and System Roots. I can see the certificates I downloaded though.
I have OS X El Capitan V10.11.4.
Any advice?
Thanks