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Only some domains show in Centrify Office 365 app

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When I add the Office 365 app to Centrify and login in with an Office 365 administrator, only two of our three domains listed in Office 365 show up on the list of available domains in Centrify. Our primary domain, "domain.com", doesn't show, but our Microsoft domain "company.onmicrosoft.com" and a subdomain of our primary domain "subdomain.domain.com" however both do show up. I have checked in the Office 365 admin and made sure it is fully verified and functional, I have tried multiple admin accounts in Centrify, and I also checked the settings in Azure AD. I'm at a loss as to what could be the reason why it is not showing up in Centrify. Any suggestions on how to fix this? Thank you!


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